Supplementary table 4. Functional annotation of sugarcane EST clusters peferentially expressed on Colletotrichum falcatum (red rot) infection on the basis of similarity to the UniprotKB protein entries.									

Sugarcane redrot cluster ID	Length of cluster	Uniprot id of protein	Length of unirpot protein	Score	E-value	identity	similarity		
 Contig1	672	Q5Z7Y7_ORYSA (Q5Z7Y7) GCIP-interacting family protein-like	340	345 bits (885)	7.00E-94	187/200 (93%)	 196/200 (98%)		trembl
 Contig10	494	PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)	605	326 bits (835)	3.00E-89	160/164 (97%)	 163/164 (99%)		sprot
 Contig101	603	ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2)	482	301 bits (770)	1.00E-81	157/196 (80%)	 162/196 (82%)		sprot
 Contig12	661	Q7XXJ6_ORYSA (Q7XXJ6) OSJNBa0094O15.3 protein	317	100 bits (249)	4.00E-20	65/76 (85%)	 67/76 (88%)		trembl
 Contig13	723	DHAS_PROMA (P49420) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH)	343	214 bits (546)	2.00E-55	109/212 (51%)	 149/212 (70%)		sprot
 Contig14	853	ERG25_RAT (O35532) C-4 methylsterol oxidase (EC 1.14.13.72) (Methylsterol monooxygenase) (Neuropep 1) (RANP-1)	293	119 bits (298)	1.00E-26	58/154 (37%)	 85/154 (55%)		sprot
 Contig15	481	NO93_SOYBN (Q02921) Early nodulin 93 (N-93)	105	75.5 bits (184)	7.00E-14	36/51 (70%)	 42/51 (82%)		sprot
 Contig16	716	ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)	364	231 bits (590)	1.00E-60	116/171 (67%)	 142/171 (83%)		sprot
 Contig17	639	"GLYC_NEUCR (P34898) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT)"	480	224 bits (570)	2.00E-58	113/194 (58%)	 141/194 (72%)		sprot
 Contig18	682	DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain]	400	176 bits (447)	5.00E-44	88/108 (81%)	 95/108 (87%)	 4/108 (3%)	sprot
 Contig2	484	Q8S0Q9_ORYSA (Q8S0Q9) Hypothetical protein P0408G07.23 (Hypothetical protein P0434C04.2)	354	218 bits (555)	5.00E-56	118/162 (72%)	 131/162 (80%)	 6/162 (3%)	trembl
 Contig20	679	PER2_CUCSA (P19135) Peroxidase 2 (EC 1.11.1.7) (CUP2) (Fragment)	292	169 bits (429)	6.00E-42	98/199 (49%)	 116/199 (58%)	 22/199 (11%)	sprot
 Contig21	659	Q8W2U0_ORYSA (Q8W2U0) Hypothetical protein OSJNBb0089F16.6 (Expressed protein)	194	184 bits (468)	1.00E-45	106/129 (82%)	 113/129 (87%)		trembl
 Contig22	502	IKU2_ARATH (Q9LJM4) Receptor-like protein kinase HAIKU2 precursor (EC 2.7.11.1)	991	89.4 bits (220)	5.00E-18	41/107 (38%)	 74/107 (69%)	 3/107 (2%)	sprot
 Contig23	980	"Q2QMB3_ORYSA (Q2QMB3) Zinc finger protein, putative, expressed"	172	263 bits (671)	8.00E-69	126/159 (79%)	 139/159 (87%)	 1/159 (0%)	trembl
 Contig24	374	ENPL_HORVU (P36183) Endoplasmin homolog precursor (GRP94 homolog)	809	67.8 bits (164)	9.00E-12	32/34 (94%)	 34/34 (100%)		sprot
 Contig25	813	Q69P94_ORYSA (Q69P94) Hypothetical protein OJ1344_B01.13 (Hypothetical protein P0556H01.29)	232	157 bits (397)	4.00E-37	91/154 (59%)	 102/154 (66%)		trembl
 Contig26	969	ULA1_ARATH (P42744) NEDD8-activating enzyme E1 regulatory subunit (Auxin-resistance protein AXR1)	540	285 bits (728)	2.00E-76	147/222 (66%)	 179/222 (80%)		sprot
 Contig29	662	FDFT_ARATH (P53799) Squalene synthetase (EC 2.5.1.21) (SQS) (SS) (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP farnesyltransferase)	410	376 bits (966)	e-104	181/222 (81%)	 197/222 (88%)	 2/222 (0%)	sprot
 Contig31	259	UBC4_LYCES (P35135) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein)	148	168 bits (425)	5.00E-42	78/80 (97%)	 80/80 (100%)		sprot
 Contig33	388	Q84M49_ORYSA (Q84M49) Remorin-like protein	284	152 bits (384)	3.00E-36	96/99 (96%)	 99/99 (100%)		trembl
 Contig37	588	PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)	610	168 bits (425)	1.00E-41	77/82 (93%)	 80/82 (97%)		sprot
 Contig4	573	Q75KZ6_ORYSA (Q75KZ6) Putative receptor protein kinase	909	125 bits (313)	1.00E-27	63/85 (74%)	 72/85 (84%)	 1/85 (1%)	trembl
 Contig40	431	"P4HA1_RAT (P54001) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit)"	534	74.3 bits (181)	1.00E-13	42/115 (36%)	 56/115 (48%)	 4/115 (3%)	sprot
 Contig41	284	RL354_ARATH (Q9LZ41) 60S ribosomal protein L35-4	123	97.8 bits (242)	8.00E-21	62/69 (89%)	 65/69 (94%)		sprot
 Contig42	597	UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH)	480	166 bits (421)	4.00E-41	74/90 (82%)	 84/90 (93%)		sprot
 Contig44	566	Q94FG6_HORVU (Q94FG6) 2-on-2 hemoglobin	171	222 bits (566)	4.00E-57	104/122 (85%)	 111/122 (90%)		trembl
 Contig46	664	SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)	849	65.5 bits (158)	1.00E-10	35/115 (30%)	 61/115 (53%)	 7/115 (6%)	sprot
 Contig5	618	Q84VB9_ORYSA (Q84VB9) Hypothetical protein (Fragment)	343	172 bits (436)	6.00E-42	100/178 (56%)	 127/178 (71%)	 6/178 (3%)	trembl
 Contig52	671	SUT35_ARATH (Q94LW6) Probable sulfate transporter 3.5	634	275 bits (704)	7.00E-74	135/211 (63%)	 172/211 (81%)		sprot
 Contig54	646	Q7XQS1_ORYSA (Q7XQS1) OSJNBa0043L09.26 protein	163	161 bits (407)	2.00E-38	94/117 (80%)	 98/117 (83%)	 7/117 (5%)	trembl
 Contig56	684	"Q2QM83_ORYSA (Q2QM83) Galactosyltransferase family, putative, expressed"	658	344 bits (883)	1.00E-93	163/189 (86%)	 177/189 (93%)		trembl
 Contig59	658	SYFB_ARATH (Q9SGE9) Probable phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS)	598	313 bits (801)	4.00E-85	156/204 (76%)	 182/204 (89%)		sprot
 Contig60	188	R35A3_ARATH (Q9C912) 60S ribosomal protein L35a-3	112	82.4 bits (202)	4.00E-16	40/46 (86%)	 43/46 (93%)		sprot
 Contig61	308	HT1_ARATH (Q2MHE4) Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High leaf temperature protein 1)	390	81.6 bits (200)	6.00E-16	35/80 (43%)	 52/80 (65%)		sprot
 Contig63	521	Q8GVF6_ORYSA (Q8GVF6) Pyrrolidone carboxyl peptidase-like protein	219	116 bits (290)	4.00E-25	52/67 (77%)	 62/67 (92%)		trembl
 Contig65	302	SUS1_MAIZE (P04712) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 1) (Shrunken-1)	802	199 bits (506)	2.00E-51	92/94 (97%)	 94/94 (100%)		sprot
 Contig66	608	Q6ZC59_ORYSA (Q6ZC59) Zinc finger (C3HC4-type RING finger) protein family-like	277	110 bits (275)	3.00E-23	67/97 (69%)	 80/97 (82%)		trembl
 Contig67	486	Q5VRL6_ORYSA (Q5VRL6) Putative GAMYB-binding protein	484	262 bits (669)	3.00E-69	132/168 (78%)	 140/168 (83%)	 12/168 (7%)	trembl
 Contig7	666	CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)	262	116 bits (291)	5.00E-26	67/103 (65%)	 74/103 (71%)	 3/103 (2%)	sprot
 Contig71	384	RH46_ARATH (Q9LYJ9) Probable DEAD-box ATP-dependent RNA helicase 46 (EC 3.6.1.-)	645	72.4 bits (176)	4.00E-13	40/92 (43%)	 55/92 (59%)	 8/92 (8%)	sprot
 Contig73	682	TSJT1_TOBAC (P24805) Stem-specific protein TSJT1	149	100 bits (248)	6.00E-21	44/93 (47%)	 65/93 (69%)		sprot
 Contig74	510	C76C4_ARATH (O64635) Cytochrome P450 76C4 (EC 1.14.-.-)	511	110 bits (276)	2.00E-24	51/93 (54%)	 68/93 (73%)		sprot
 Contig75	626	Q69TZ1_ORYSA (Q69TZ1) Putative zinc-binding protein	251	196 bits (499)	3.00E-49	99/133 (74%)	 107/133 (80%)	 4/133 (3%)	trembl
 Contig76	579	RL182_ARATH (P42791) 60S ribosomal protein L18-2	187	190 bits (482)	3.00E-48	90/106 (84%)	 99/106 (93%)		sprot
 Contig77	320	SF21_HELAN (O23969) Pollen-specific protein SF21	352	96.7 bits (239)	2.00E-20	43/59 (72%)	 51/59 (86%)		sprot
 Contig78	367	AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase)	764	137 bits (345)	9.00E-33	66/68 (97%)	 68/68 (100%)		sprot
 Contig83	604	Q6YU05_ORYSA (Q6YU05) Putative calmodulin-binding protein	652	312 bits (800)	4.00E-84	175/195 (89%)	 185/195 (94%)		trembl
 Contig84	466	MCAT_ARATH (Q93XM7) Mitochondrial carnitine/acylcarnitine carrier-like protein (Protein A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein)	300	124 bits (310)	2.00E-28	66/86 (76%)	 78/86 (90%)		sprot
 Contig87	499	RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)	265	145 bits (367)	5.00E-35	70/70 (100%)	 70/70 (100%)		sprot
 Contig88	966	Q9AVH2_PEA (Q9AVH2) Putative senescence-associated protein (Fragment)	282	261 bits (667)	2.00E-68	143/216 (66%)	 150/216 (69%)	 5/216 (2%)	trembl
 Contig89	696	Q8GVF6_ORYSA (Q8GVF6) Pyrrolidone carboxyl peptidase-like protein	219	256 bits (654)	4.00E-67	123/161 (76%)	 141/161 (87%)		trembl
 Contig9	586	"FABI_BRANA (P80030) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplast precursor (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase)"	385	267 bits (682)	2.00E-71	151/172 (87%)	 162/172 (94%)		sprot
 Contig90	573	Q94HV4_ORYSA (Q94HV4) Putative retroelement	1476	280 bits (717)	1.00E-74	137/188 (72%)	 158/188 (84%)		trembl
 Contig93	986	WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)	414	174 bits (442)	3.00E-43	111/322 (34%)	 173/322 (53%)		sprot
 Contig95	335	Q8RU98_ORYSA (Q8RU98) Hypothetical protein OSJNBb0075K12.8 (Hypothetical protein) (Hypothetical protein OSJNAb0023M11.13)	285	72.4 bits (176)	4.00E-12	34/34 (100%)	 34/34 (100%)		trembl
 Contig96	771	Q8LDS7_ARATH (Q8LDS7) Hypothetical protein (At1g48440) (Expressed protein)	129	134 bits (336)	4.00E-30	71/117 (60%)	 94/117 (80%)		trembl
 Contig97	675	UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35) (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)	420	187 bits (475)	3.00E-47	89/158 (56%)	 117/158 (74%)		sprot