Sequencing Status


Monthly submission of phase II/PLN clones (Cumulative)
An overview of the sequencing status of chromosome 11 (57.3-116.2 cM) (Last updated: 16/08/2005)
S.No.	Map Position	Acc.No.	BAC/PAC	Marker	Size(bp)	Seq. Status	Annotation
1	57.3 cM	AC137752	OSJNBa0041C22	R120, R1891	161172	PLN	RiceGAAS
2		AC135864	OSJNBb0071K13	FPC	176150	PLN	RiceGAAS
3		AC135242	OSJNBa0070D14	FPC	175083	PLN	RiceGAAS
4		AC137113	OSJNBb0006N14	FPC	155730	PLN	RiceGAAS
5		AC132003	OSJNBb0091D07	FPC	144652	PLN	RiceGAAS
6		AC137586	OSJNBb0054A16	FPC	164605	PLN	RiceGAAS
7		AC135512	OSJNBb0057M06	FPC	147788	PLN	RiceGAAS
8	57.6 cM	AC136786	OSJNBa0027P09	C754	171862	PLN	RiceGAAS
9		AC135398	OSJNBa0079N13	FPC	140946	PLN	RiceGAAS
10		AC136843	OSJNBa0094M06	FPC	135406	PLN	RiceGAAS
11		AC109646	OSJNBa0017K22	FPC	176399	PLN	RiceGAAS
12		AC150654	OSJNBa0094L06	FPC	189328	PLN	RiceGAAS
13		AC114012	OSJNBa0079H11	FPC	143925	PLN	RiceGAAS
14		AC114011	OSJNBa0078F20	C602	151042	PLN	RiceGAAS
15	64.2 cM	AC131343	OSJNBa0057E15	R728	149035	PLN	RiceGAAS
16		AC137745	OSJNBb0041J18	FPC	129523	PLN	RiceGAAS
17		AC148759	OSJNBa0030K09	FPC	143355	PLN	RiceGAAS
18		AC136378	OSJNBb0047D03	C137	126165	PLN	RiceGAAS
19	64.8 cM	AC136787	OSJNBa0052B22	E20817	156725	PLN	RiceGAAS
20		AC135121	OSJNBb0089M05	FPC	131308	PLN	RiceGAAS
21		AC133608	OSJNBb0085G12	FPC	121472	PLN	RiceGAAS
22		AC135569	OSJNBb0018F17	G62	104291	PLN	RiceGAAS
23		AC145306	OSJNBa0010E20(PCR)	FPC	713	PLN
24	68.4 cM	AC124151	OSJNBb0019E05	G257	129021	PLN	RiceGAAS
25		AC150202	B1024A10	FPC	157609	PLN	RiceGAAS
26		AC136009	OSJNBa0025K21	FPC	146539	PLN	RiceGAAS
27		AC136377	OSJNBa0028G07	FPC	157463	PLN	RiceGAAS
28		AC137759	OSJNBb0008H02	FPC	143438	PLN	RiceGAAS
29		AC136150	OSJNBa0023F12	FPC	147801	PLN	RiceGAAS
30	70.3 cM	AC136491	OSJNBa0062E06	E3588S	158842	PLN	RiceGAAS
31	71.4 cM	AC133710	OSJNBa0002A19	E60570	139052	PLN	RiceGAAS
32	74.6 cM	AC137694	OSJNBa0002B02	C567	147896	PLN	RiceGAAS
33	74.9 cM	AC124150	OSJNBb0001I22	RG2, E51178	162413	PLN	RiceGAAS
34		AC150702	B1356E08	FPC	136853	PLN	RiceGAAS
35		AC134926	OSJNBb0056I10	FPC	158833	PLN	RiceGAAS
36	77.4 cM	AC135568	OSJNBa0078F08	E11749	165440	PLN	RiceGAAS
37		AC134256	OSJNBa0033H01	FPC	178233	PLN	RiceGAAS
38	78.8 cM	AC133248	OSJNBa0080I08	E11382SB	197156	PLN	RiceGAAS
39		AC134925	OSJNBa0041J17	FPC	148829	PLN	RiceGAAS
40	79.1 cM	AC136481	OSJNBa0007D07	S4002S	133930	PLN	RiceGAAS
41		AC151106	OSJNOa0281D22		35282	PLN	RiceGAAS
			GAP (~0.8cM)
42		AC151105	OSJNOa0010H20		35359	PLN	RiceGAAS
43	79.9 cM	AC108223	OSJNBa0019A16	R3341	175425	PLN	RiceGAAS
44	80.2 cM	AC108224	OSJNBa0038F07	C1127	175703	PLN	RiceGAAS
45		AC134053	OSJNBb0005H02	FPC	144882	PLN	RiceGAAS
46		AC119678	OSJNBa0005H23	FPC	32949	PLN	RiceGAAS
47		AC151599	OSJNBb0018H03		93081	PLN	RiceGAAS
48		AC128706	OSJNBa0063F24	FPC	152738	PLN	RiceGAAS
49		AC134624	OSJNBa0041I05	FPC	148785	PLN	RiceGAAS
50		AC150698	OSJNBa0072P10	FPC	147540	PLN	RiceGAAS
51		AC137753	OSJNBb0084M23	FPC	134180	PLN	RiceGAAS
52	83.0 cM	AC136956	OSJNBa0038B22	RG103	177557	PLN	RiceGAAS
53		AC136905	OSJNBb0064E13	FPC	150223	PLN	RiceGAAS
54		AC120889	OSJNBa0018K14	FPC	152725	PLN	RiceGAAS
55	84.6 cM	AC133291	P0542B04	E61360S	182823	PLN	RiceGAAS
56		AC109644	P0459F09	E61360S	143533	PLN	RiceGAAS
57		AC137693	OJ1111_B01	FPC	136068	PLN	RiceGAAS
58	85.7 cM	AC136149	OSJNBa0060B06	FPC	162568	PLN	RiceGAAS
59		AC108871	OSJNBb0077M24	FPC	128920	PLN	RiceGAAS
60		AC109929	OSJNBa0093J03	FPC	200626	PLN	RiceGAAS
61		AC133218	P0549G05	V78	149473	PLN	RiceGAAS
62		AC137589	OSJNBa0072L08	FPC	152272	PLN	RiceGAAS
63		AC137588	OSJNBa0060K21	FPC	153973	PLN	RiceGAAS
64		AC104847	P0480H08	S723	156301	PLN	RiceGAAS
65		AC136148	OSJNBa0029K08	FPC	136687	PLN	RiceGAAS
66		AC146334	B1356F10	FPC	170681	PLN	RiceGAAS
67		AC146765	B1008D06_A01	FPC	3323	PLN
68		AC137744	OSJNBa0074L11	S10928, E4336	180703	PLN	RiceGAAS
69		AC144700	OSJNBa0017H17	FPC	156331	PLN	RiceGAAS
70	90.6 cM	AC114828	OSJNBb0038L23	FPC	124582	PLN	RiceGAAS
71		AC136842	OSJNBa0085C16	FPC	156069	PLN	RiceGAAS
72		AC118347	OSJNBa0043E10	FPC	124591	PLN	RiceGAAS
73	90.6 cM	AC109365	OSJNBa0034P08	C6	173088	PLN	RiceGAAS
74	91.4 cM	AC109594	OSJNBa0007P22	C6, G4001	148068	PLN	RiceGAAS
75		AC121328	OSJNBb0030E22	FPC	135468	PLN	RiceGAAS
76	97.3 cM	AC120884	OSJNBa0017D19	FPC	145856	PLN	RiceGAAS
77		AC120984	OSJNBb0026G02	R1690	123472	PLN	RiceGAAS
78		AC120887	OSJNBa0088K21	FPC	153239	PLN	RiceGAAS
79		AC120886	OSJNBa0068E24	FPC	141492	PLN	RiceGAAS
80		AC120885	OSJNBa0042J05	FPC	150295	PLN	RiceGAAS
81		AC104844	OSJNBb0030L19	FPC	128848	PLN	RiceGAAS
82		AF161269	OSJNBa0034K24	RG353	142852	PLN	RiceGAAS
83		AC104845	OSJNBb0091E08	FPC	119526	PLN	RiceGAAS
84		AC146766	B1112E06	FPC	177488	PLN	RiceGAAS
85		AC144716	OSJNBb0108D09	FPC	127371	PLN	RiceGAAS
86	99.2 cM	AC109832	P0038B07	G1465	149697	PLN	RiceGAAS
87	99.2 cM	AC121327	OSJNBa0016O23	FPC	149400	PLN	RiceGAAS
88		AC125780	OSJNBa0030I15	FPC	150206	PLN	RiceGAAS
89	101.9 cM	AC118346	OSJNBa0039F06	FPC	133022	PLN	RiceGAAS
90		AC125782	OSJNBa0095P22	FPC	165626	PLN	RiceGAAS
91		AC145349	OSJNBa0096I10	FPC	171946	PLN	RiceGAAS
92		AC104846	P0004C07	G376	135425	PLN	RiceGAAS
93		AC113249	OSJNBa0041L19	FPC	155086	PLN	RiceGAAS
94		AC122143	OSJNBa0090F16	FPC	147341	PLN	RiceGAAS
95		AC125781	OSJNBa0058G18	FPC	175397	PLN	RiceGAAS
96	104.9 cM	AC137751	OSJNBa0014E11	L833	199348	PLN	RiceGAAS
97	104.9 cM	AC108872	OSJNBb0079P23	FPC	125090	PLN	RiceGAAS
98		AC145775	P0313E01	FPC	149215	PLN	RiceGAAS
99	106.8 cM	AC129224	OSJNBa0029P13	L468	158506	PLN	RiceGAAS
100	106.8 cM	AC120888	P0485F09	C82	161276	PLN	RiceGAAS
101	109.3 cM	AC108870	P0682E05	C950	162223	PLN	RiceGAAS
102		AC146592	OSJNBa0010P23_PCR	FPC	19234	PLN	RiceGAAS
103		AC125783	OSJNBb0039K08	FPC	122163	PLN	RiceGAAS
104		AC126057	OSJNBb0026D16	FPC	129166	PLN	RiceGAAS
105		AC129227	OSJNBb0099J16	FPC	133198	PLN	RiceGAAS
106	112.4 cM	AC129226	OSJNBb0024E08	Y2668	131946	PLN	RiceGAAS
107	112.9 cM	AC133609	OSJNBa0002C14	L1044	154029	PLN	RiceGAAS
108		AC134924	OSJNBb0076M06	FPC	133581	PLN	RiceGAAS
109		AC134922	OSJNBa0004D06	FPC	157547	PLN	RiceGAAS
110		AC146582	OSJNBa0042P06_E10	FPC	1708	PLN
111		AC135643	OSJNBa0023F01	FPC	145009	PLN	RiceGAAS
112		AC134923	OSJNBb0030I07	FPC	122733	PLN	RiceGAAS
113		AC136998	OSJNBa0082P17	FPC	157539	PLN	RiceGAAS
114		AC135190	OSJNBa0064H09	FPC	146742	PLN	RiceGAAS
115		AC135644	OSJNBa0085H07	FPC	133291	PLN	RiceGAAS
116		AC144734	OSJNBa0026O24_C01	FPC	2105	PLN
117		AC133216	OSJNBb0049B20	FPC	131337	PLN	RiceGAAS
118		AC145395	OSJNBa0047M04	R1506	110861	PLN	RiceGAAS
Additional clones submitted :
119	10.0-17.0 cM	AC133217	OSJNBa0052H02^#	Sequence overlap	159632	PLN	RiceGAAS
120	10.0-17.0 cM	AC126056	OSJNBa0031P23^#	Sequence overlap	147624	phase II	RiceGAAS
121	~57.6 cM	AC123535	OSJNBb0082J12	FPC	81502	phase II	RiceGAAS
122		AC109645	P0410D09	FPC	43883	PLN	RiceGAAS
123	~77.4 cM	AC136925	OSJNBa0090B19	FPC	113164	phase II	RiceGAAS
124	~85.7 cM	AC104848	P0704G09	FPC	160922	phase II	RiceGAAS
125	~106.8 cM	AC129225	OSJNBa0051D10	FPC	140272	PLN	RiceGAAS
126	chr03	AC137758	OSJNBa0060B05^#		94344	phase II	RiceGAAS
127	chr09	AC129339	OSJNBb0115K12^#	FPC	128788	phase II	RiceGAAS
128		AC135189	OSJNBa0010F04^#	FPC	144898	phase II	RiceGAAS
129		AC131246	OSJNBa0016J08^#	FPC	133253	phase II	RiceGAAS
130	101.9 cM	AC138608	Pseudomolecule 101.9		348970	phase II	RiceGAAS
^# These clones were found not to fall in the region assigned to India / to overlap with clones given above.