Table 2 List of rice genes showing significant homology with wheat contigs containing bin-mapped ESTs. The genes are arranged according to the established minimum tiling path on the long arm of rice chromosome 11(57.3 to 116.2 cM). In order to get the sequence of the rice genes, click on the gene ID
Rice Genes Information BLASTN Search Results Mapped Wheat EST
S No. BAC/PAC Clone Gene ID Predicted cDNA size (bp) Product* Score E-value % Homology Contig     Chromosome Bin
1  OSJNBa0041C22 16 1380 Hydroxymethyl-transferase   1386 0.0   975/1071 (91%) 11244 C-2AL1-0.85
2  OSJNBa0041C22 24 387 Hypothetical    239 1e-63 173/196 (88%) 9969 6BS5-0.76-1.05
5AL23-0.87-1.00
4DL12-0.71-1.00
3  OSJNBa0070D14 33 2331 TNP-2 like transposon    198 2e-50 239/339 (70%) 7888 3DL3-0.81-1.00
C-3BL2-0.22
4 OSJNBb0006N14 21 2199 F-box Protein    139 8e-33 176/260 (67%) 1812 7AS1-0.89-1.00
5  OSJNBb0091D07 26 1481 Cyt. P450    271 2e-72 362/539 (67%) 7298 3AS4-0.45-1.00
3BS9-0.57-0.78
3DS6-0.55-1.00
6  OSJNBb0057M06 11 1395 Cyt. P450    413 e-115 499/713 (69%) 7298 3AS4-0.45-1.00
3BS9-0.57-0.78
3DS6-0.55-1.00
7  OSJNBa0027P09 32 513 Salt inducible protein    450 e-127 399/505 (79%) 9048 7DS4-0.61-1.00
8 OSJNBa0078F20 17 1671 Cyt. P450 131 1e-30 255/418 (61%) 8719 3BS9-0.57-0.78
3DS6-0.55-1.00
3AS4-0.45-1.00
9  OSJNBa0057E15 9 1671 Hypothetical    131 1e-30 255/418 (61%) 8719 3BS9-0.57-0.78
3DS6-0.55-1.00
3AS4-0.45-1.00
10  OSJNBa0057E15 26 1317 Enolase phosphatase    237 1e-62 180/211 (85%) 5101 5BS4-0.43-0.56
5AS1-0.40-0.75
C-5DS1-0.63
11  OSJNBa0057E15 27 315 Hypothetical    228 2e-60 177/211 (83%) 5101 5BS4-0.43-0.56
5AS1-0.40-0.75
C-5DS1-0.63
12  OSJNBa0057E15 29 2982 Dihydrofolate reductase    641 0.0   836/1248 (66%) 7791 7AS5-0.59-0.89
3DL3-0.81-1.00
7DS4-0.61-1.00
3AL5-0.78-1.00
4AL4-0.80-1.00
13  OSJNBb0041J18 1 1035 6-Phosphoglucodehydrogenase    502 e-142 675/1014 (66%) 7791 7AS5-0.59-0.89
3DL3-0.81-1.00
7DS4-0.61-1.00
3AL5-0.78-1.00
4AL4-0.80-1.00
14  OSJNBb0041J18 29 651 Hypothetical    171 6e-43 147/182 (80%) 9887 3AS4-0.45-1.00
1BS.sat18-0.50-1.00
3BS8-0.78-1.00
1AS3-0.86-1.00
1DS5-0.70-1.00
15  OSJNBb0085G12 22 2397 FAD oxidoreductase 190 5e-48 340/541(62%) 3591 1AL3-0.61-1.00
1BL3-0.85-1.00
2DS5-0.47-1.00
16  OSJNBb0085G12 27 210 Hypothetical 264 1e-71 187/208(89%) 5339 5AL23-0.87-1.00
4BL5-0.86-1.00
4DL13-0.56-0.71
17  OSJNBb0085G12 30 681 Hypothetical 125 5e-29 165/242(68%) 8629 C-3AL3-0.42
C-3BL2-0.22
3DL2-0.27-0.81
18  OSJNBb0018F17 11 1074 Ubiquitin activator 651 0.00 465/520(89%) 8531 C7B
19  OSJNBb0008H02 17 912 Nodulin MTn3 protein    643 0.0   501/587 (85%) 1425 C-2AL1-0.85
20  OSJNBa0002A19 9 1563 Serine palmitoyl transferase    470 e-132 414/527 (78%) 7178 3DL2-0.27-0.81
3BL7-0.63-1.00
21  OSJNBb0001I22 16 339 Hypothetical    123 7e-29 167/247 (67%) 11107 6B
6D
C-7BS1-0.27
22 P0410D09 5 2436 Auxin response factor 313 3e-85 348/484 (71%) 8017 3BL7-0.63-1.00
3AL5-0.78-1.00
23  OSJNBb0056I10 3 2445 Auxin response factor    191 2e-48 168/216 (77%) 8017 3BL7-0.63-1.00
3AL5-0.78-1.00
24  OSJNBb0056I10 23 1227 Cyt.P450 935 0.00 687/775(88%) 11126 4DS1-0.53-0.67
4AL12-0.43-0.59
    4BS4-0.37-0.57
14
25  OSJNBa0078F08 1479 Hypothetical    171 2e-42 674/1201 (56%) 9288 C-5AL10-0.57*
24 C-5BL14-0.75*
26  OSJNBa0078F08 561 Unknown    497 e-141 455/567 (80%) 9944 C-2BS1-0.53
2DS1-0.33-0.47
28 2AS5-0.78-1.00
27  OSJNBa0078F08 1329 Auxin response factor    148 6e-36 237/376 (63%) 802 3A
32 3BL2-0.22-0.50
28  OSJNBa0078F08 35 1008 Chalcone synthase    122 6e-28 136/196 (69%) 11674 5DS2-0.78-1.00
29  OSJNBa0078F08 1242 Chalcone synthase    320 2e-87 400/589 (67%) 5170 1DS5-0.70-1.00
38 1AS3-0.86-1.00
30  OSJNBa0078F08 1206 Chalcone synthase    299 3e-81 400/592 (67%) 5170 1BS.sat19-0.31-0.50
1DS5-0.70-1.00
39 1AS3-0.86-1.00
31  OSJNBa0078F08 1314 Chalcone synthase    378 e-105 427/601 (71%) 5170 1BS.sat19-0.31-0.50
1DS5-0.70-1.00
5 1AS3-0.86-1.00
32  OSJNBa0033H01 27 1197 Chalcone synthase    278 4e-75 416/652 (63%) 11674 5DS2-0.78-1.00
33 OSJNBa0080I08 2946 GP-91 protein 283 4e-76 342/501 (68%),  5610 3DL2-0.27-0.81
3BL10-0.50-0.63
8 3AL3-0.42-0.78
34  OSJNBa0041J17 20 2667 Respiratory burst oxidase    302 7e-82 305/420 (72%) 5966 5AL23-0.87-1.00
35  OSJNBa0041J17 840 Citrate synthase    499 e-141 352/390 (90%) 10911 C-6DL6-0.29
24 6DS2-0.45-0.79
36  OSJNBa0041J17 29 984 Endoxyloglucan transferase    380 e-105 275/311 (88%) 2228 C-4AL12-0.43
37  OSJNBa0041J17 2 1128 O-methyl transferase    524 e-149 610/875 (69%) 7329 6DS6-0.99-1.00
38  OSJNBa0007D07 9 888 Endoxyloglucan transferase 380 e-106 275/311(88%) 2228 C-4AL12-0.43
39  OSJNBb0005H02 567 Hypothetical    177 7e-45 190/254 (74%) 1189 4DL9-0.31-0.56
10 4BL5-0.86-1.00
40  OSJNBb0005H02 1083 GF14-d protein    624 e-179 572/746 (76%) 11684 4DS3-0.67-0.82
3 4AS4-0.63-0.76
41  OSJNBa0063F24 735 Purple acid phosphatase    424 e-119 396/525 (75%) 7253 4DL12-0.71-1.00
C-4AL12-0.43
4 4BL1-0.71-1.00*
42  OSJNBa0063F24 195 Hypothetical    112 8e-26 95/120 (79%) 9497 4DL12-0.71-1.00
C-4AL12-0.43
5 4BL1-0.71-1.00*
43  OSJNBa0063F24 759 Purple acid phosphatase    293 1e-79 400/596 (67%) 9497 4DL12-0.71-1.00
C-4AL12-0.43
22 4BL1-0.71-1.00*
44  OSJNBa0041I05 23 105 Hypothetical    128 6e-31 87/94 (92%) 7497 5AL12-0.35-0.57
45  OSJNBa0041I05 7 1146 Transcription activator    120 2e-27 104/133 (78%) 5726 C-7BL2-0.33
46 OSJNBa0060B06 3294 Hypothetical 302 3e-82 297/404 (73%) 471 C-4BL1-0.71
C-4DL9-0.31
6 4A
47 OSJNBb0077M24 1530 Unknown 204 1e-52  172/211(81%) 10990 4D
4B
7 4AL
48 OSJNBb0077M24 342 Hypothetical 202 9e-53 139/151(92%) 10990 4D
4B
22 4AL
49 OSJNBa0093J03 1482 Unknown 152 8e-37 145/185(78%) 5362 2BL4-0.50-0.89
2DL3-0.49-1.00*
25 C-2AL1-0.85
50 OSJNBa0093J03 2424 Lipooxygenase 827 0.0 1094/1617(67%) 10492 4AL13-0.59-0.66
4BS8-0.57-0.81
16 4DS3-0.67-0.82
51 P0549G05 1479 Beta-1,3 glucanase 302 4e-82 372/544(68%) 861 6DL10-0.80-1.00
10 6AL8-0.90-1.00
52 OSJNBa0072L08 1377 Hypothetical 407 e-113 301/346(86%) 895 C-4BL1-0.71
C-4DL9-0.31
11 C-4AL12-0.43
53 OSJNBa0072L08 825 Unknown 313 9e-86 246/280(87%) 11090 3DL2-0.27-0.81
3AL3-0.42-0.78
3BL2-0.22-0.50
2DL9-0.76-1.00
2BL6-0.89-1.00
C-4AS1-0.20
C-4DS1-0.53
C-2AL1-0.85
4BS4-0.37-0.57
54 OSJNBa0060K21 13 399 Unknown 101 4e-22 82/101(81%) 516 4DL13-0.56-1.00*
55 P0480H08 8 879 Ribosylation factor 104 1e-22 110/155(70%) 11009 C-5BL6-0.29
C-5DL1-0.60
C-5AL12-0.35
56 P0480H08 17 2298 Unknown 1106 9e-23 85/104(81%) 3812 5AL10-0.57-0.78
5BL9-0.76-0.79
5DL9-0.74-0.76
57 P0480H08 24 819 50S ribosomal protein 277 9e-75 267/340(78%) 5520 3DL2-0.27-0.81
3BL10-0.50-0.63
58 P0704G09 13 4020 Mla1 like protein 122 3e-27 315/535 (58%) 14768 6DL10-0.80-1.00
6BL5-0.40-1.00
6AL8-0.90-1.00
59 OSJNBa0074L11 2 4857 Hypothetical 101 4e-21 92/121(76%) 8360 3BL2-0.22-0.50
60 OSJNBa0074L11 9 429 Hypothetical 288 2e-78 307/423(72%) 9269 5BL6-0.29-0.75*
C-5DL1-0.60
5AL12-0.35-0.57
61 OSJNBa0074L11 10 429 Hypothetical 271 4e-73 295/415(71%) 9269 5BL6-0.29-0.75*
C-5DL1-0.60
5AL12-0.35-0.57
62 OSJNBa0074L11 13 1497 Hypothetical 917 0.0 687/791(86%) 1308 1BL3-0.85-1.00
1DL2-0.41-1.00
63 OSJNBa0074L11 28 1608 Phospholipase 473 e-133 600/887(67%) 10864 4AL5-0.66-0.80
5BL16-0.79-1.00
5A
64 OSJNBa0074L11 31 1659 Hypothetical 153 3e-37 275/409(67%) 1095 C-4DS1-0.53
65 OSJNBa0074L11 35 1971 Unknown 137 2e-32 186/276(67%) 4972 2DS1-0.33-0.47
66 OSJNBa0074L11 39 315 Unknown 115 1e-26 118/164(71%) 9485 1DL2-0.41-1.00
67 OSJNBa0074L11 43 447 Pathogenesis related protein 439 e-123 349/422(82%) 9485 1DL2-0.41-1.00
68 OSJNBa0085C16 24 1473 Flavonol glucosyltransferase 278 5e-75 251/317(79%) 3659 C-3BS1-0.33
C-3AS2-0.23
C-3DS3-0.24
69 OSJNBa0085C16 29 2100 DEAD/DEAH box 110 3e-24 137/205(66%) 6174 4AS3-0.76-1.00
4BL5-0.86-1.00
70 OSJNBa0043E10 21 1872 DEAD/DEAH box 110 3e-24 137/205 (66%) 6174 4AS3-0.76-1.00
4BL5-0.86-1.00
71 OSJNBa0043E10 26 1473 UTP glucose transferase 278 5e-75 251/317(79%) 3659 C-3BS1-0.33
C-3AS2-0.23
C-3DS3-0.24
72 OSJNBa0034P08 19 1905 Receptor kinase 500 e-141 473/611(77%) 8158 C-5DL1-0.60
2BS3-0.84-1.00
73 OSJNBa0034P08 20 1962 Unknown 163 5e-40 177/252(70%) 4624 C-5AL10-0.57*
C-5DL1-0.60
C-5BL14-0.75*
74 OSJNBa0034P08 28 684 Pyruvate decarboxylase 245 3e-65 227/300(75%) 11566 4AS1-0.20-0.63
2AS5-0.78-1.00
75 OSJNBa0007P22 5 783 Hypothetical 294 5e-80 230/270(85%) 7158 7AS5-0.59-0.89
C-6BS5-0.76
C-4DL9-0.31
7DS4-0.61-1.00
7BS1-0.27-1.00
76 OSJNBa0007P22 43 711 Pyruvate decarboxylase 252 3e-67 231/304(75%) 11566 4AS1-0.20-0.63
2AS5-0.78-1.00
77 OSJNBa0042J05 3 1254 Patatin like protein 803 0.0 730/944 (77%) 9246 C-2BL2-0.36
C-2DL3-0.49
78 OSJNBa0042J05 7 1233 Patatin like protein 478 e-135 464/617 (75%) 9246 C-2BL2-0.36
C-2DL3-0.49
79 OSJNBa0042J05 14 1200 Expressed protein AT2g15695.1 190 2e-48 281/443 (63%) 2382 7DS4-0.61-1.00
7AS5-0.59-0.89
7BS1-0.27-1.00
80 OSJNBa0042J05 24 732 Proteosome alpha subunit 713 0.0 495/541 (91%) 10708 C-4BL1-0.71
C-4DL9-0.31
C-4AL12-0.43
81 OSJNBa0042J05 28 3696 Unknown 362 e-100 324/410 (79%) 6451 5BL6
5AL10-0.57-0.78
82 OSJNBa0034K24 5 1081 12.8 kDa proten 101 1e-21 187/240(77%) 5361 3BL7-0.63-1.00
3AL5-0.78-1.00
3DL3-0.81-1.00
83 OSJNBa0034K24 6 4826 26.2 kDa protein 286 7e-77 359/508(70%) 7069 7BL10-0.78-1.00
3DS6-0.55-1.00
3A
3BS8-0.78-1.00
7DL2-0.61-0.82
84 OSJNBb0091E08 20 1020 Cinnamyl - ADH 748 0.0 623/765(81%) 9239 3BL7-0.63-1.00
3AL5-0.78-1.00
3DL3-0.81-1.00
85 P0038B07 2 1221 Hypothetical 878 0.0 727/896(81%) 8841 2BS1-0.53-0.75
C-3AS2-0.23
7AS5-0.59-0.89
86 P0038B07 6 594 Hypothetical 206 2e-53 199/254(78%) 6654 C4A
C-4DS1-0.53
C-4BS4-0.37
87 OSJNBa0016O23 6 5049 Helicase 101 5e-21 92/121 (76%) 8360 3BL2-0.22-0.50
88 OSJNBa0039F06 25 1539 Cyt. P450 188 9e-48 601/1044(57%) 10064 1BL3-0.85-1.00
1DL2-0.41-1.00
1AL1-0.17-0.61
89 OSJNBa0039F06 29 1539 Cyt. P450 177 2e-44 581/1002(57%) 4414 1BL3-0.85-1.00
1DL2-0.41-1.00
1AL1-0.17-0.61
90 OSJNBa0095P22 27 1341 U2SnRNP factor 364 e-101 335/436(76%) 8474 C-4AL12-0.43
C-4DS1-0.53
91 OSJNBa0095P22 28 1416 Sugar transporter 301 1e-81 383/567(67%) 7227 4BL5-0.86-1.00
4AS3-0.76-1.00
4DL13-0.56-0.71
92 OSJNBa0095P22 29 1437 Sugar transporter 307 1e-83 388/573(67%) 7227 4BL5-0.86-1.00
4AS3-0.76-1.00
4DL13-0.56-0.71
93 OSJNBa0095P22 30 1431 Sugar transporter 328 8e-90 392/573(68%) 7227 4BL5-0.86-1.00
4AS3-0.76-1.00
4DL13-0.56-0.71
94 OSJNBa0095P22 32 1947 Sugar transporter 302 5e-82 384/573(67%) 7227 4BL5-0.86-1.00
4AS3-0.76-1.00
4DL13-0.56-0.71
95 OSJNBa0095P22 36 1947 Sugar transporter 678 0.0 515/603 (85%) 10646 C-5DS1-0.63
5AS1-0.40-0.75
5BS4-0.43-0.56
96 OSJNBa0095P22 37 2082 GTP binding protein 123 4e-28 94/111 (84%) 10157 4AS1-0.20-0.63
97 OSJNBa0041L19 6 1347 Anthranilate-N-benzoyltransferase 362 e-100 325/422 (77%) 5763 4AS3-0.76-1.00
4BL5-0.86-1.00
98 OSJNBa0041L19 14 1338 Anthranilate-N-benzoyltransferase 372 e-103 328/422 (77%) 5763 4AS3-0.76-1.00
4BL5-0.86-1.00
99 OSJNBa0090F16 10 1071 Hypothetical 187 2e-47 222/327(67%) 9438 C-4BL1-0.71
4DL13-0.56-0.71
100 OSJNBa0090F16 15 612 Hypothetical 168 5e-42 192/279 (68%) 4156 C-4BL1-0.71
4DL13-0.56-0.71
101 OSJNBa0090F16 16 1863 Hypothetical 226 4e-59 314/486(64%) 4500 C-4DL9-0.31
4AS1-0.20-0.63
102 P0682E05 32 1194 Polygalacturonidase 212 5e-55 246/359(68%) 6469 5BL16-0.79-1.00
4AL5-0.66-0.80
5DL5-0.76-1.00
103 OSJNBb0039K08 4 1008 Peroxidase 155 6e-38 274/446 (61%) 6051 4AS1-0.20-0.63
C-4BL1-0.71
4DL9-0.31-0.56
104 OSJNBb0024E08 23 1458 Receptor kinase 101 1e-21 179/225 (60%) 6152 7BL7-0.63-0.78
105 OSJNBa0002C14 25 8367 Reverse transcriptase 315 3e-85 293/388(75%) 6152 7BL7-0.63-0.78
106 OSJNBb0076M06 5 8346 Reverse transcriptase 315 3e-85 293/388(75%) 6152 7BL7-0.63-0.78
107 OSJNBb0076M06 22 807 Hypothetical 190 2e-48 275/421 (65%) 6152 7BL7-0.63-0.78
108 OSJNBb0076M06 23 603 Hypothetical 477 e-135 392/479(81%) 6152 7BL7-0.63-0.78
109 OSJNBa0082P17 7 1632 Unknown 291 9e-79 401/604(66%) 7855 6AL8-0.90-1.00
2DS5-0.47-1.00
2BS1-0.53-0.75
110 OSJNBa0082P17 29 1710 Kinase 278 6e-75 264/353(74%) 8158 C-5DL1-0.60
2BS3-0.84-1.00
111 OSJNBa0082P17 32 1683 U2SnRNP factor 1285 0.0 916/1022(89%) 8474 C-4AL12-0.43
C-4DS1-0.53
112 OSJNBa0064H09 7 1653 U2SnRNP factor 1258 0.0 916/1022(89%) 8474 C-4AL12-0.43
C-4DS1-0.53
113 OSJNBa0085H07 1 2871 Disease resistant protein 120 5e-27 211/337(62%) 1812 7AS1-0.89-1.00
                         
Putative function of the predicted rice genes in this table are given below. The numbers are the serial number of the gene in this table. Genes not included in the list below either have unknown function or are hypothetical genes
*Besides gene products identifed on the basis of sequence homology, hypothetical and unknown genes are included as defined in Table 1